Package index • epicodr

All functions
`build_ards_df()`	Build dataframe with ARDS by imaging procedures
`build_hap_long_symptom_df()`	Create long symptom data frame
`build_hap_pcs_score_df_with_proms()`	Create data frame with Symptom Complexes and Post-COVID variables with and without PROMs in Post-COVID-Score
`build_hap_pcs_score_df_without_proms()`	Create data frame with Post-COVID variables without PROMs in Post-COVID-Score
`build_pcs_score_suep_df_with_proms()`	Create data frame with Symptom Complexes and Post-COVID variables with and without PROMs in Post-COVID-Score
`build_pcs_score_suep_df_without_proms()`	Create data frame with Symptom Complexes and Post-COVID variables without PROMs in Post-COVID-Score
`build_suep_long_symptom_df()`	Create long symptom data frame
`build_sy_parentform_merged_df()`	Build symptom subform data frame (merged with parent forms)
`build_sy_parents_children_merged_df()`	Build symptom subform data frame (merged with parent and cild forms)
`build_sy_subform_merged_df()`	Build symptom subform data frame
`build_who_scale_hap()`	Calculate and categorize WHO-Scale
`build_who_scale_suep_df()`	Calculate and categorize WHO-Scale
`calculate_6ils_total()`	Calculate Six Item Loneliness Scale (6 ILS) sum score
`calculate_bmi()`	Compute body mass index (BMI)
`calculate_brs_n()`	Calculate Brief Resilience Scale (BRS) number of answered questions
`calculate_brs_sum()`	Calculate Brief Resilience Scale (BRS) sum score
`calculate_brs_total()`	Calculate Brief Resilience Scale (BRS) total score
`calculate_cfq11_sum()`	Calculate Chalder Fatigue Scale (CFQ-11) sum score
`calculate_days_ecu()`	Calculate time span in days
`calculate_dn4_sum()`	Calculate Pain diagnostic questionnaire (DN-4 - Interview) sum score
`calculate_eq5d3l_proxy_index()`	Calculate EQ5D-3L-Index (PROXY Version)
`calculate_eq5d3l_y_index()`	Calculate EQ5D-3L-Index (Y Version)
`calculate_eq5d5l_index()`	Calculate EQ5D-5L-Index
`calculate_eq5d5l_y_index()`	Calculate EQ5D-5L-Index (Y Version)
`calculate_facitf_sum()`	Calculate Functional Assessment of Chronic Illness Therapy - Fatigue (FACIT-F) sum score
`calculate_fss_mean()`	Calculate Fatigue Severity Scale (FSS) mean score
`calculate_fss_sum()`	Calculate Fatigue Severity Scale (FSS) sum score
`calculate_fss_sum_mental()`	Calculate Fatigue Severity Scale (FSS) sum score for sub component "general and mental fatigue"
`calculate_fss_sum_phys()`	Calculate Fatigue Severity Scale (FSS) sum score for sub component "physical fatigue"
`calculate_full_years()`	Calculate full years from two dates
`calculate_gad7_sum()`	Calculate Generalized Anxiety Disorder 7 (GAD-7) sum score
`calculate_pcs_score_hap()`	Calculate PCS Score
`calculate_pcs_score_suep()`	Calculate PCS Score
`calculate_phq4_sum()`	Calculate Patient Health Questionnaire (PHQ 4) sum score
`calculate_phq8_sum()`	Calculate Patient Health Questionnaire Depression Scale 8 (PHQ 8) sum score
`calculate_pss_total()`	Calculate Perceived Stress Scale (PSS) sum score
`categorize_6ils_ecu()`	Categorize Six Item Loneliness Scale (6 ILS)
`categorize_apache2_score_ecu()`	Categorize Acute Physiology And Chronic Health Evaluation (APACHE) Score
`categorize_barthel_ecu()`	Categorize barthel index
`categorize_bloodpressure_ecu()`	Categorize blood pressure
`categorize_bmi_ecu()`	Categorize BMI
`categorize_brs_ecu()`	Categorize Brief Resilience Scale (BRS)
`categorize_cfq11()`	Categorize Chalder Fatigue Scale (CFQ-11)
`categorize_dds_score_ecu()`	Categorize delir Detection Score (DDS)
`categorize_dn4_ecu()`	Categorize Pain diagnostic questionnaire (DN-4 - Interview)
`categorize_facitf_ecu()`	Categorize Functional Assessment of Chronic Illness Therapy - Fatigue (FACIT-F)
`categorize_fss_mean_ecu()`	Categorize Fatigue Severity Scale (FSS) Mean Score
`categorize_fss_sum_ecu()`	Categorize Fatigue Severity Scale (FSS) Sum Score
`categorize_gad7_ecu()`	Categorize Generalized Anxiety Disorder 7 (GAD-7) sum score
`categorize_gcs_ecu()`	Categorize Glasgow Coma Scale
`categorize_heartfrequency_ecu()`	Categorize heartfrequency
`categorize_horowitz_index_ecu()`	Categorize Horowitz-Index (lung function)
`categorize_icdsc_score_ecu()`	Categorize Intensive Care delir Screening Checklist (ICDSC)
`categorize_mmrc_ecu()`	Categorize modified Medical Research Council Dyspnea Scale (MMRC)
`categorize_moca_ecu()`	Categorize Montreal Cognitive Assessment (MoCA)
`categorize_news_score_ecu()`	Categorize National Early Warning Score (NEWS)
`categorize_oxigensaturation_ecu()`	Categorize oxigen saturation
`categorize_ph_ecu()`	Categorize pH of blood gas analysis
`categorize_phq4_ecu()`	Categorize Patient Health Questionnaire (PHQ 4)
`categorize_phq8_ecu()`	Categorize Patient Health Questionnaire Depression Scale 8 (PHQ 8)
`categorize_phq8_ecu_2()`	Categorize Patient Health Questionnaire Depression Scale 8 (PHQ 8) - 4 groups
`categorize_pss_ecu()`	Categorize Perceived Stress Scale (PSS)
`categorize_resp_rate_ecu()`	Categorize respiration rate
`categorize_temp_ecu()`	Categorize body temperature
`dates_tsExport()`	Convert dates in NAPKON Transferstelle Export study data tables
`defactorize_tsExport()`	Remove factorized variables tsExport data.
`detect_other_symptom_of_complex()`	Calculate symptom complex for Post Covid Syndrome Score (PCSS) calculation - for symptoms coded in "other"
`detect_symptom_complex()`	Calculate symptom complex for Post Covid Syndrome Score (PCSS) calculation
`detect_symptom_complex_hap()`	Calculate symptom complex for Post-COVID Score (PCS) calculation
`ecu_age_cat_3()`	Categorize age in three intervals
`ecu_age_cat_dec()`	Categorize age in decades
`factorize_tsExport()`	Factorize in NAPKON Transferstelle Export study data tables
`get_ecu_background_pop()`	Primary codes migration background from nationality and country of birth
`label_tsExport()`	Set variable labels in NAPKON Transferstelle Export study data tables
`missing_labels_default`	Default value labels that are generally considered as missing value.
`missing_values_default`	Default numeric values generally considered as missing value.
`prepare_spss_export()`	Prepare SPSS Export
`primary_coding_hap()`	Primary coding HAP Data
`primary_coding_hap_age()`	Primary coding age
`primary_coding_hap_apache2()`	Primary coding for Acute Physiology And Chronic Health Evaluation (APACHE) Score
`primary_coding_hap_barthel_disc()`	Primary coding Barthel index at discharge
`primary_coding_hap_barthel_pre()`	Primary coding Barthel index prior to infection (baseline)
`primary_coding_hap_bmi()`	Primary coding Body Mass Index (BMI)
`primary_coding_hap_clinical_params()`	Primary coding clinical parameters
`primary_coding_hap_clinical_params_his()`	Primary coding clinical parameters (historic)
`primary_coding_hap_dds()`	Primary coding for Delirium Detection Score (DDS)
`primary_coding_hap_eq5d5l()`	Primary coding EQ5D-5L-Index
`primary_coding_hap_fss()`	Primary coding Fatigue Severity Scale (FSS)
`primary_coding_hap_icdsc()`	Primary coding for Intensive Care Delirium Screening Checklist (ICDSC)
`primary_coding_hap_moca()`	Primary cpding for Montreal Cognitive Assessment (MoCA)
`primary_coding_hap_news_first()`	Primary coding for National Early Warning Score (NEWS)
`primary_coding_hap_pcs_score()`	Primary coding Post-COVID Score (PCS)
`primary_coding_hap_who_scale()`	Primary coding WHO-Scale
`primary_coding_pop()`	Primary coding POP Data
`primary_coding_pop_6ils()`	Primary coding Six Item Loneliness Scale (6 ILS)
`primary_coding_pop_6mwt()`	6 Minute Walk Test (6MWT)
`primary_coding_pop_abd_overw()`	Primary coding Body Mass Index (BMI)
`primary_coding_pop_age()`	Primary coding age
`primary_coding_pop_bmi()`	Primary coding Body Mass Index (BMI)
`primary_coding_pop_brs()`	Primary coding Brief Resilience Scale (BRS)
`primary_coding_pop_cardio_params()`	Primary coding cardiological parameters
`primary_coding_pop_clinical_params()`	Primary coding Clinical Parameters
`primary_coding_pop_eq5d5l()`	Primary coding EQ5D-5L-Index
`primary_coding_pop_facitf()`	Primary coding Functional Assessment of Chronic Illness Therapy - Fatigue (FACIT-Fatigue Scale)
`primary_coding_pop_gad7()`	Primary coding Generalized Anxiety Disorder 7 (GAD-7)
`primary_coding_pop_gpaq_calc()`	Primary coding GPAQ calculation
`primary_coding_pop_gpaq_post()`	Primary coding Global Physical Activity Questionnaire (GPAQ) post COVID
`primary_coding_pop_gpaq_pre()`	Primary coding Global Physical Activity Questionnaire (GPAQ) pre COVID
`primary_coding_pop_gpaq_vars_post()`	Primary coding GPAQ variable/column selection for GPAQ post COVID
`primary_coding_pop_gpaq_vars_pre()`	Primary coding GPAQ variable/column selection for GPAQ pre COVID
`primary_coding_pop_kccq()`	Kansas City Cardiomyopathy Questionnaire (KCCQ)
`primary_coding_pop_migration()`	Primary migration background
`primary_coding_pop_mmrc()`	Primary coding modified Medical Research Council Dyspnea Scale (mMRC)
`primary_coding_pop_moca()`	Primary coding Montreal Cognitive Assessment (MoCA)
`primary_coding_pop_phq8()`	Primary coding Patient Health Questionnaire depession scale (PHQ-8)
`primary_coding_pop_pneumo_params()`	Primary coding cardiological parameters
`primary_coding_pop_psqi()`	Pittsburgh Sleep Quality Index (PSQI)
`primary_coding_pop_pss()`	Primary coding Perceived Stress Scale (PSS)
`primary_coding_suep()`	Primary coding SUEP Data
`primary_coding_suep_6ils()`	Primary coding Six Item Loneliness Scale (6 ILS)
`primary_coding_suep_age()`	Primary coding age
`primary_coding_suep_ards()`	Primary coding for ARDS by imaging procedures
`primary_coding_suep_baseline_barthel()`	Primary coding Barthel index prior to infection (baseline)
`primary_coding_suep_bmi()`	Primary coding Body Mass Index (BMI)
`primary_coding_suep_brs()`	Primary coding Brief Resilience Scale (BRS)
`primary_coding_suep_cfq11()`	Primary coding Chalder Fatigue Scale (CFQ-11)
`primary_coding_suep_clinical_params()`	Primary coding clinical parameters
`primary_coding_suep_dn4()`	Primary coding Pain diagnostic Questionnaire (DN-4 - Interview)
`primary_coding_suep_eq5d3l_13t18p()`	Primary coding EQ5D-3L-Index for children aged 13-18 (PROXY Version)
`primary_coding_suep_eq5d3l_4p()`	Primary coding EQ5D-3L-Index for children aged 4 (PROXY Version)
`primary_coding_suep_eq5d3l_5t7p()`	Primary coding EQ5D-3L-Index for children aged 5-7 (PROXY Version)
`primary_coding_suep_eq5d3l_8p()`	Primary coding EQ5D-3L-Index for children aged 8 (PROXY Version)
`primary_coding_suep_eq5d3l_8y()`	Primary coding EQ5D-3L-Index for children aged 8 (Y Version)
`primary_coding_suep_eq5d3l_9t11p()`	Primary coding EQ5D-3L-Index for children aged 9-11 (PROXY Version)
`primary_coding_suep_eq5d3l_9t11y()`	Primary coding EQ5D-3L-Index for children aged 9-11 (Y Version)
`primary_coding_suep_eq5d5l()`	Primary coding EQ5D-5L-Index
`primary_coding_suep_eq5d5l_12p()`	Primary coding EQ5D-5L-Index for children aged 12 (PROXY Version)
`primary_coding_suep_eq5d5l_12y()`	Primary coding EQ5D-5L-Index for children aged 12 (Y Version)
`primary_coding_suep_eq5d5l_13t18y()`	Primary coding EQ5D-5L-Index for children aged 13-18 (Y Version)
`primary_coding_suep_moca()`	Primary coding MoCA
`primary_coding_suep_patient_barthel()`	Primary coding Barthel index (patient status)
`primary_coding_suep_pcs_score()`	Primary coding PCS-Score
`primary_coding_suep_phq4()`	Primary coding Patient Health Questionnaire (PHQ-4)
`primary_coding_suep_pss()`	Primary coding Perceived Stress Scale (PSS)
`primary_coding_suep_recode_promis_cogn_funct()`	Primary coding PROMIS-29 Cognitive impairments items (recoding)
`primary_coding_suep_recode_promis_dysp()`	Primary coding PROMIS-29 Dyspnoe items (recoding) adds the following columns to promext: ecu_pro_dysp_1, ecu_pro_dysp_2, ecu_pro_dysp_3, ecu_pro_dysp_4, ecu_pro_dysp_5, ecu_pro_dysp_6, ecu_pro_dysp_7, ecu_pro_dysp_8, ecu_pro_dysp_9, ecu_pro_dysp_10
`primary_coding_suep_recode_promis_phys()`	Primary coding PROMIS-29 Physical Function items (recoding)
`primary_coding_suep_recode_promis_sleep()`	Primary coding PROMIS-29 Sleep disturbance items (recoding)
`primary_coding_suep_recode_promis_social()`	Primary coding PROMIS-29 Ability to participate in social roles and activities items (recoding)
`primary_coding_suep_who_scale()`	Primary coding WHO-Scale
`read_tsExport()`	Read NAPKON Transferstelle export
`read_tsExport_raw()`	Load NAPKON Transferstelle export data from directory or zip file.
`recode_6ils()`	Recode Six Item Loneliness Scale (6 ILS) items
`recode_brs()`	Recode Brief Resilience Scale items
`recode_cfq11()`	Recode Chalder Fatigue Scale (CFQ-11) items
`recode_dn4()`	Recode Pain diagnostic questionnaire (DN-4 - Interview)
`recode_phq()`	Recode Patient Health Questionnaire items (PHQ)
`recode_promis29_phys_funct()`	Recode PROMIS-29 Physical Function items
`recode_promis29_sleep()`	Recode PROMIS-29 Sleep disturbance items
`recode_promis29_social()`	Recode PROMIS-29 Ability to participate in social roles and activities items
`recode_promis_cognitive()`	Recode PROMIS-29 Cognitive impairments items
`recode_promis_dyspnoe()`	Recode PROMIS-29 Dyspnea items
`recode_pss()`	Recode Perceived Stress Scale (PSS) items
`remove_st_dates_tsExport()`	Remove original secutrial date string variables from tsExport data.
`return_child_table_names_of_parent()`	Return parent table name (for one parent table)
`return_children_table_names_of_parents()`	Return parent table names (for two or more parent tables)
`return_parent_child_pairs()`	Return parent table names (for two or more parent tables)
`set_id_names()`	Sets ID names and writes them into vectors
`spss_labelled_tsExport()`	Add Value labels to tsExport data.
`spss_missings_tsExport()`	Set Missing Values in tsExport.
`summarize_who_scale()`	Summarize WHO-Scale
`valuelabels_tsExport()`	Set value labels in NAPKON Transferstelle Export study data tables
`write_tsExport()`	Write tsExport exports to other formats

Reference

All functions