All functions

build_ards_df()

Build dataframe with ARDS by imaging procedures

build_hap_long_symptom_df()

Create long symptom data frame

build_hap_pcs_score_df_with_proms()

Create data frame with Symptom Complexes and Post-COVID variables with and without PROMs in Post-COVID-Score

build_hap_pcs_score_df_without_proms()

Create data frame with Post-COVID variables without PROMs in Post-COVID-Score

build_pcs_score_suep_df_with_proms()

Create data frame with Symptom Complexes and Post-COVID variables with and without PROMs in Post-COVID-Score

build_pcs_score_suep_df_without_proms()

Create data frame with Symptom Complexes and Post-COVID variables without PROMs in Post-COVID-Score

build_suep_long_symptom_df()

Create long symptom data frame

build_sy_parentform_merged_df()

Build symptom subform data frame (merged with parent forms)

build_sy_parents_children_merged_df()

Build symptom subform data frame (merged with parent and cild forms)

build_sy_subform_merged_df()

Build symptom subform data frame

build_who_scale_hap()

Calculate and categorize WHO-Scale

build_who_scale_suep_df()

Calculate and categorize WHO-Scale

calculate_6ils_total()

Calculate Six Item Loneliness Scale (6 ILS) sum score

calculate_bmi()

Compute body mass index (BMI)

calculate_brs_n()

Calculate Brief Resilience Scale (BRS) number of answered questions

calculate_brs_sum()

Calculate Brief Resilience Scale (BRS) sum score

calculate_brs_total()

Calculate Brief Resilience Scale (BRS) total score

calculate_cfq11_sum()

Calculate Chalder Fatigue Scale (CFQ-11) sum score

calculate_days_ecu()

Calculate time span in days

calculate_dn4_sum()

Calculate Pain diagnostic questionnaire (DN-4 - Interview) sum score

calculate_eq5d3l_proxy_index()

Calculate EQ5D-3L-Index (PROXY Version)

calculate_eq5d3l_y_index()

Calculate EQ5D-3L-Index (Y Version)

calculate_eq5d5l_index()

Calculate EQ5D-5L-Index

calculate_eq5d5l_y_index()

Calculate EQ5D-5L-Index (Y Version)

calculate_facitf_sum()

Calculate Functional Assessment of Chronic Illness Therapy - Fatigue (FACIT-F) sum score

calculate_fss_mean()

Calculate Fatigue Severity Scale (FSS) mean score

calculate_fss_sum()

Calculate Fatigue Severity Scale (FSS) sum score

calculate_fss_sum_mental()

Calculate Fatigue Severity Scale (FSS) sum score for sub component "general and mental fatigue"

calculate_fss_sum_phys()

Calculate Fatigue Severity Scale (FSS) sum score for sub component "physical fatigue"

calculate_full_years()

Calculate full years from two dates

calculate_gad7_sum()

Calculate Generalized Anxiety Disorder 7 (GAD-7) sum score

calculate_pcs_score_hap()

Calculate PCS Score

calculate_pcs_score_suep()

Calculate PCS Score

calculate_phq4_sum()

Calculate Patient Health Questionnaire (PHQ 4) sum score

calculate_phq8_sum()

Calculate Patient Health Questionnaire Depression Scale 8 (PHQ 8) sum score

calculate_pss_total()

Calculate Perceived Stress Scale (PSS) sum score

categorize_6ils_ecu()

Categorize Six Item Loneliness Scale (6 ILS)

categorize_apache2_score_ecu()

Categorize Acute Physiology And Chronic Health Evaluation (APACHE) Score

categorize_barthel_ecu()

Categorize barthel index

categorize_bloodpressure_ecu()

Categorize blood pressure

categorize_bmi_ecu()

Categorize BMI

categorize_brs_ecu()

Categorize Brief Resilience Scale (BRS)

categorize_cfq11()

Categorize Chalder Fatigue Scale (CFQ-11)

categorize_dds_score_ecu()

Categorize delir Detection Score (DDS)

categorize_dn4_ecu()

Categorize Pain diagnostic questionnaire (DN-4 - Interview)

categorize_facitf_ecu()

Categorize Functional Assessment of Chronic Illness Therapy - Fatigue (FACIT-F)

categorize_fss_mean_ecu()

Categorize Fatigue Severity Scale (FSS) Mean Score

categorize_fss_sum_ecu()

Categorize Fatigue Severity Scale (FSS) Sum Score

categorize_gad7_ecu()

Categorize Generalized Anxiety Disorder 7 (GAD-7) sum score

categorize_gcs_ecu()

Categorize Glasgow Coma Scale

categorize_heartfrequency_ecu()

Categorize heartfrequency

categorize_horowitz_index_ecu()

Categorize Horowitz-Index (lung function)

categorize_icdsc_score_ecu()

Categorize Intensive Care delir Screening Checklist (ICDSC)

categorize_mmrc_ecu()

Categorize modified Medical Research Council Dyspnea Scale (MMRC)

categorize_moca_ecu()

Categorize Montreal Cognitive Assessment (MoCA)

categorize_news_score_ecu()

Categorize National Early Warning Score (NEWS)

categorize_oxigensaturation_ecu()

Categorize oxigen saturation

categorize_ph_ecu()

Categorize pH of blood gas analysis

categorize_phq4_ecu()

Categorize Patient Health Questionnaire (PHQ 4)

categorize_phq8_ecu()

Categorize Patient Health Questionnaire Depression Scale 8 (PHQ 8)

categorize_phq8_ecu_2()

Categorize Patient Health Questionnaire Depression Scale 8 (PHQ 8) - 4 groups

categorize_pss_ecu()

Categorize Perceived Stress Scale (PSS)

categorize_resp_rate_ecu()

Categorize respiration rate

categorize_temp_ecu()

Categorize body temperature

dates_tsExport()

Convert dates in NAPKON Transferstelle Export study data tables

defactorize_tsExport()

Remove factorized variables tsExport data.

detect_other_symptom_of_complex()

Calculate symptom complex for Post Covid Syndrome Score (PCSS) calculation - for symptoms coded in "other"

detect_symptom_complex()

Calculate symptom complex for Post Covid Syndrome Score (PCSS) calculation

detect_symptom_complex_hap()

Calculate symptom complex for Post-COVID Score (PCS) calculation

ecu_age_cat_3()

Categorize age in three intervals

ecu_age_cat_dec()

Categorize age in decades

factorize_tsExport()

Factorize in NAPKON Transferstelle Export study data tables

get_ecu_background_pop()

Primary codes migration background from nationality and country of birth

label_tsExport()

Set variable labels in NAPKON Transferstelle Export study data tables

missing_labels_default

Default value labels that are generally considered as missing value.

missing_values_default

Default numeric values generally considered as missing value.

prepare_spss_export()

Prepare SPSS Export

primary_coding_hap()

Primary coding HAP Data

primary_coding_hap_age()

Primary coding age

primary_coding_hap_apache2()

Primary coding for Acute Physiology And Chronic Health Evaluation (APACHE) Score

primary_coding_hap_barthel_disc()

Primary coding Barthel index at discharge

primary_coding_hap_barthel_pre()

Primary coding Barthel index prior to infection (baseline)

primary_coding_hap_bmi()

Primary coding Body Mass Index (BMI)

primary_coding_hap_clinical_params()

Primary coding clinical parameters

primary_coding_hap_clinical_params_his()

Primary coding clinical parameters (historic)

primary_coding_hap_dds()

Primary coding for Delirium Detection Score (DDS)

primary_coding_hap_eq5d5l()

Primary coding EQ5D-5L-Index

primary_coding_hap_fss()

Primary coding Fatigue Severity Scale (FSS)

primary_coding_hap_icdsc()

Primary coding for Intensive Care Delirium Screening Checklist (ICDSC)

primary_coding_hap_moca()

Primary cpding for Montreal Cognitive Assessment (MoCA)

primary_coding_hap_news_first()

Primary coding for National Early Warning Score (NEWS)

primary_coding_hap_pcs_score()

Primary coding Post-COVID Score (PCS)

primary_coding_hap_who_scale()

Primary coding WHO-Scale

primary_coding_pop()

Primary coding POP Data

primary_coding_pop_6ils()

Primary coding Six Item Loneliness Scale (6 ILS)

primary_coding_pop_6mwt()

6 Minute Walk Test (6MWT)

primary_coding_pop_abd_overw()

Primary coding Body Mass Index (BMI)

primary_coding_pop_age()

Primary coding age

primary_coding_pop_bmi()

Primary coding Body Mass Index (BMI)

primary_coding_pop_brs()

Primary coding Brief Resilience Scale (BRS)

primary_coding_pop_cardio_params()

Primary coding cardiological parameters

primary_coding_pop_clinical_params()

Primary coding Clinical Parameters

primary_coding_pop_eq5d5l()

Primary coding EQ5D-5L-Index

primary_coding_pop_facitf()

Primary coding Functional Assessment of Chronic Illness Therapy - Fatigue (FACIT-Fatigue Scale)

primary_coding_pop_gad7()

Primary coding Generalized Anxiety Disorder 7 (GAD-7)

primary_coding_pop_gpaq_calc()

Primary coding GPAQ calculation

primary_coding_pop_gpaq_post()

Primary coding Global Physical Activity Questionnaire (GPAQ) post COVID

primary_coding_pop_gpaq_pre()

Primary coding Global Physical Activity Questionnaire (GPAQ) pre COVID

primary_coding_pop_gpaq_vars_post()

Primary coding GPAQ variable/column selection for GPAQ post COVID

primary_coding_pop_gpaq_vars_pre()

Primary coding GPAQ variable/column selection for GPAQ pre COVID

primary_coding_pop_kccq()

Kansas City Cardiomyopathy Questionnaire (KCCQ)

primary_coding_pop_migration()

Primary migration background

primary_coding_pop_mmrc()

Primary coding modified Medical Research Council Dyspnea Scale (mMRC)

primary_coding_pop_moca()

Primary coding Montreal Cognitive Assessment (MoCA)

primary_coding_pop_phq8()

Primary coding Patient Health Questionnaire depession scale (PHQ-8)

primary_coding_pop_pneumo_params()

Primary coding cardiological parameters

primary_coding_pop_psqi()

Pittsburgh Sleep Quality Index (PSQI)

primary_coding_pop_pss()

Primary coding Perceived Stress Scale (PSS)

primary_coding_suep()

Primary coding SUEP Data

primary_coding_suep_6ils()

Primary coding Six Item Loneliness Scale (6 ILS)

primary_coding_suep_age()

Primary coding age

primary_coding_suep_ards()

Primary coding for ARDS by imaging procedures

primary_coding_suep_baseline_barthel()

Primary coding Barthel index prior to infection (baseline)

primary_coding_suep_bmi()

Primary coding Body Mass Index (BMI)

primary_coding_suep_brs()

Primary coding Brief Resilience Scale (BRS)

primary_coding_suep_cfq11()

Primary coding Chalder Fatigue Scale (CFQ-11)

primary_coding_suep_clinical_params()

Primary coding clinical parameters

primary_coding_suep_dn4()

Primary coding Pain diagnostic Questionnaire (DN-4 - Interview)

primary_coding_suep_eq5d3l_13t18p()

Primary coding EQ5D-3L-Index for children aged 13-18 (PROXY Version)

primary_coding_suep_eq5d3l_4p()

Primary coding EQ5D-3L-Index for children aged 4 (PROXY Version)

primary_coding_suep_eq5d3l_5t7p()

Primary coding EQ5D-3L-Index for children aged 5-7 (PROXY Version)

primary_coding_suep_eq5d3l_8p()

Primary coding EQ5D-3L-Index for children aged 8 (PROXY Version)

primary_coding_suep_eq5d3l_8y()

Primary coding EQ5D-3L-Index for children aged 8 (Y Version)

primary_coding_suep_eq5d3l_9t11p()

Primary coding EQ5D-3L-Index for children aged 9-11 (PROXY Version)

primary_coding_suep_eq5d3l_9t11y()

Primary coding EQ5D-3L-Index for children aged 9-11 (Y Version)

primary_coding_suep_eq5d5l()

Primary coding EQ5D-5L-Index

primary_coding_suep_eq5d5l_12p()

Primary coding EQ5D-5L-Index for children aged 12 (PROXY Version)

primary_coding_suep_eq5d5l_12y()

Primary coding EQ5D-5L-Index for children aged 12 (Y Version)

primary_coding_suep_eq5d5l_13t18y()

Primary coding EQ5D-5L-Index for children aged 13-18 (Y Version)

primary_coding_suep_moca()

Primary coding MoCA

primary_coding_suep_patient_barthel()

Primary coding Barthel index (patient status)

primary_coding_suep_pcs_score()

Primary coding PCS-Score

primary_coding_suep_phq4()

Primary coding Patient Health Questionnaire (PHQ-4)

primary_coding_suep_pss()

Primary coding Perceived Stress Scale (PSS)

primary_coding_suep_recode_promis_cogn_funct()

Primary coding PROMIS-29 Cognitive impairments items (recoding)

primary_coding_suep_recode_promis_dysp()

Primary coding PROMIS-29 Dyspnoe items (recoding) adds the following columns to promext: ecu_pro_dysp_1, ecu_pro_dysp_2, ecu_pro_dysp_3, ecu_pro_dysp_4, ecu_pro_dysp_5, ecu_pro_dysp_6, ecu_pro_dysp_7, ecu_pro_dysp_8, ecu_pro_dysp_9, ecu_pro_dysp_10

primary_coding_suep_recode_promis_phys()

Primary coding PROMIS-29 Physical Function items (recoding)

primary_coding_suep_recode_promis_sleep()

Primary coding PROMIS-29 Sleep disturbance items (recoding)

primary_coding_suep_recode_promis_social()

Primary coding PROMIS-29 Ability to participate in social roles and activities items (recoding)

primary_coding_suep_who_scale()

Primary coding WHO-Scale

read_tsExport()

Read NAPKON Transferstelle export

read_tsExport_raw()

Load NAPKON Transferstelle export data from directory or zip file.

recode_6ils()

Recode Six Item Loneliness Scale (6 ILS) items

recode_brs()

Recode Brief Resilience Scale items

recode_cfq11()

Recode Chalder Fatigue Scale (CFQ-11) items

recode_dn4()

Recode Pain diagnostic questionnaire (DN-4 - Interview)

recode_phq()

Recode Patient Health Questionnaire items (PHQ)

recode_promis29_phys_funct()

Recode PROMIS-29 Physical Function items

recode_promis29_sleep()

Recode PROMIS-29 Sleep disturbance items

recode_promis29_social()

Recode PROMIS-29 Ability to participate in social roles and activities items

recode_promis_cognitive()

Recode PROMIS-29 Cognitive impairments items

recode_promis_dyspnoe()

Recode PROMIS-29 Dyspnea items

recode_pss()

Recode Perceived Stress Scale (PSS) items

remove_st_dates_tsExport()

Remove original secutrial date string variables from tsExport data.

return_child_table_names_of_parent()

Return parent table name (for one parent table)

return_children_table_names_of_parents()

Return parent table names (for two or more parent tables)

return_parent_child_pairs()

Return parent table names (for two or more parent tables)

set_id_names()

Sets ID names and writes them into vectors

spss_labelled_tsExport()

Add Value labels to tsExport data.

spss_missings_tsExport()

Set Missing Values in tsExport.

summarize_who_scale()

Summarize WHO-Scale

valuelabels_tsExport()

Set value labels in NAPKON Transferstelle Export study data tables

write_tsExport()

Write tsExport exports to other formats